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integrative protein signature database  (InterPro Inc)

 
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    InterPro Inc integrative protein signature database
    Integrative Protein Signature Database, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/integrative protein signature database/product/InterPro Inc
    Average 90 stars, based on 1 article reviews
    integrative protein signature database - by Bioz Stars, 2026-04
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    The sequences information of RpedOBPs and RpedCSPs.
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    The sequences information of RpedOBPs and RpedCSPs.

    Journal: Frontiers in Physiology

    Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

    doi: 10.3389/fphys.2022.949607

    Figure Lengend Snippet: The sequences information of RpedOBPs and RpedCSPs.

    Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

    Techniques: Binding Assay

    The number of OBP and CSP genes in different insect species, obtained from genome (*) or antennal transcriptome (#). The digits by the histogram bars represent number of OBP and CSP genes in different hemipteran species ( Aphis gossypii , Nilaparvata lugens , Sogatella furcifera , Adelphocoris lineolatus , Adelphocoris suturalis , Nysius ericae , R. pedestris ) and phylogenetic tree was built by these hemipteran species COI genes.

    Journal: Frontiers in Physiology

    Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

    doi: 10.3389/fphys.2022.949607

    Figure Lengend Snippet: The number of OBP and CSP genes in different insect species, obtained from genome (*) or antennal transcriptome (#). The digits by the histogram bars represent number of OBP and CSP genes in different hemipteran species ( Aphis gossypii , Nilaparvata lugens , Sogatella furcifera , Adelphocoris lineolatus , Adelphocoris suturalis , Nysius ericae , R. pedestris ) and phylogenetic tree was built by these hemipteran species COI genes.

    Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

    Techniques:

    Localization of OBPs and CSPs in the R. pedestris genome. Based on the annotation file of R. pedestris , we acquired the localization of OBP and CSP genes in genome. (A) The RpedOBPs in the R. pedestris genome, they clustered together in 4 chromosomes and one scaffold. (B) The RpedCSPs in the R. pedestris genome, they clustered together in 4 chromosomes.

    Journal: Frontiers in Physiology

    Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

    doi: 10.3389/fphys.2022.949607

    Figure Lengend Snippet: Localization of OBPs and CSPs in the R. pedestris genome. Based on the annotation file of R. pedestris , we acquired the localization of OBP and CSP genes in genome. (A) The RpedOBPs in the R. pedestris genome, they clustered together in 4 chromosomes and one scaffold. (B) The RpedCSPs in the R. pedestris genome, they clustered together in 4 chromosomes.

    Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

    Techniques:

    Genomic structure of R. pedestris OBPs and CSPs. Based on the annotation file of R. pedestris, we acquired genomic structures of OBP and CSP genes. (A) Numbers of exon/intron and exon/intron structures of RpedOBPs. (B) Numbers of exon/intron and exon/intron structures of RpedCSPs.

    Journal: Frontiers in Physiology

    Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

    doi: 10.3389/fphys.2022.949607

    Figure Lengend Snippet: Genomic structure of R. pedestris OBPs and CSPs. Based on the annotation file of R. pedestris, we acquired genomic structures of OBP and CSP genes. (A) Numbers of exon/intron and exon/intron structures of RpedOBPs. (B) Numbers of exon/intron and exon/intron structures of RpedCSPs.

    Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

    Techniques:

    Tissue expression profiles of R. pedestris OBPs by qRT-PCR. The relative expression level is presented as mean ± SE ( n = 3). The heatmap use Log2 and row scale based the relative expression level data. Different capital letters mean a significant difference between tissues ( p < 0.05, ANOVA, LSD). He, heads; Th, thoraxes; Ab, abdomens; Le, legs; Wi, wings; FA, female antennae; MA, male antennae.

    Journal: Frontiers in Physiology

    Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

    doi: 10.3389/fphys.2022.949607

    Figure Lengend Snippet: Tissue expression profiles of R. pedestris OBPs by qRT-PCR. The relative expression level is presented as mean ± SE ( n = 3). The heatmap use Log2 and row scale based the relative expression level data. Different capital letters mean a significant difference between tissues ( p < 0.05, ANOVA, LSD). He, heads; Th, thoraxes; Ab, abdomens; Le, legs; Wi, wings; FA, female antennae; MA, male antennae.

    Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

    Techniques: Expressing, Quantitative RT-PCR

    Tissue expression profiles of R. pedestris CSPs by qRT-PCR. The relative expression level is presented as mean ± SE ( n = 3). The heatmap use Log2 and row scale based the relative expression level data. Different capital letters mean a significant difference between tissues ( p < 0.05, ANOVA, LSD). He, heads; Th, thoraxes; Ab, abdomens; Le, legs; Wi, wings; FA, female antennae; MA, male antennae.

    Journal: Frontiers in Physiology

    Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

    doi: 10.3389/fphys.2022.949607

    Figure Lengend Snippet: Tissue expression profiles of R. pedestris CSPs by qRT-PCR. The relative expression level is presented as mean ± SE ( n = 3). The heatmap use Log2 and row scale based the relative expression level data. Different capital letters mean a significant difference between tissues ( p < 0.05, ANOVA, LSD). He, heads; Th, thoraxes; Ab, abdomens; Le, legs; Wi, wings; FA, female antennae; MA, male antennae.

    Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

    Techniques: Expressing, Quantitative RT-PCR